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研究学习 / 检索整理
esm
esm
Comprehensive toolkit for protein language models including ESM3 (generative multimodal protein design across sequence, structure, and function) and ESM C…
研究学习 / 检索整理
hugging-face-paper-publisher
hugging-face-paper-publisher
Publish and manage research papers on Hugging Face Hub. Supports creating paper pages, linking papers to models/datasets, claiming authorship, and generating…
研究学习 / 检索整理
startup-analysis
startup-analysis
Analyze a startup from three perspectives: VC investor, job applicant, and CEO/founder. Use this skill whenever the user wants to evaluate a startup, assess whether to invest in or join a startup, do due diligence, evaluate a job offer from a startup, understand a startup's competitive position, or assess company health and trajectory. Triggers: "analyze this startup", "should I join [company]", "is [company] a good investment", "evaluate [company]", "due diligence on [company]", "what do you think of [startup]", "should I take this startup job offer", "how healthy is [company]", "startup assessment", "company analysis", "is [company] worth joining", "what's the outlook for [company]", "research [company] for me", any mention of evaluating or assessing a startup or tech company from investment, career, or strategic perspectives — provide all three perspectives by default.
研究学习 / 检索整理
molfeat
molfeat
Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert SMILES to features, for QSAR and molecular…
研究学习 / 检索整理
qiskit
qiskit
IBM quantum computing framework. Use when targeting IBM Quantum hardware, working with Qiskit Runtime for production workloads, or needing IBM optimization…
研究学习 / 检索整理
histolab
histolab
Lightweight WSI tile extraction and preprocessing. Use for basic slide processing tissue detection, tile extraction, stain normalization for H&E images. Best…
研究学习 / 检索整理
phylogenetics
phylogenetics
Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (fast NJ/ML). Visualize with ETE3 or…
研究学习 / 检索整理
pymatgen
pymatgen
Materials science toolkit. Crystal structures (CIF, POSCAR), phase diagrams, band structure, DOS, Materials Project integration, format conversion, for…
研究学习 / 检索整理
matchms
matchms
Spectral similarity and compound identification for metabolomics. Use for comparing mass spectra, computing similarity scores (cosine, modified cosine), and…
研究学习 / 检索整理
lamindb
lamindb
This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR.…
研究学习 / 检索整理
iso-13485-certification
iso-13485-certification
Comprehensive toolkit for preparing ISO 13485 certification documentation for medical device Quality Management Systems. Use when users need help with ISO…
研究学习 / 检索整理
pennylane
pennylane
Hardware-agnostic quantum ML framework with automatic differentiation. Use when training quantum circuits via gradients, building hybrid quantum-classical…
研究学习 / 检索整理
dhdna-profiler
dhdna-profiler
Extract cognitive patterns and thinking fingerprints from any text. Use this skill when the user wants to analyze how someone thinks, understand cognitive…
研究学习 / 检索整理
pathml
pathml
Full-featured computational pathology toolkit. Use for advanced WSI analysis including multiplexed immunofluorescence (CODEX, Vectra), nucleus segmentation,…
研究学习 / 检索整理
qutip
qutip
Quantum physics simulation library for open quantum systems. Use when studying master equations, Lindblad dynamics, decoherence, quantum optics, or cavity QED.…
研究学习 / 检索整理
cellxgene-census
cellxgene-census
Query the CELLxGENE Census (61M+ cells) programmatically. Use when you need expression data across tissues, diseases, or cell types from the largest curated…
研究学习 / 检索整理
glycoengineering
glycoengineering
Analyze and engineer protein glycosylation. Scan sequences for N-glycosylation sequons (N-X-S/T), predict O-glycosylation hotspots, and access curated…
研究学习 / 检索整理
gtars
gtars
High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks, overlap…
研究学习 / 检索整理
etetoolkit
etetoolkit
Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI taxonomy, visualization (PDF/SVG), for…
研究学习 / 检索整理
polars-bio
polars-bio
High-performance genomic interval operations and bioinformatics file I/O on Polars DataFrames. Overlap, nearest, merge, coverage, complement, subtract for…